| 1. |
Uemoto, Y.*, K. Ichinoseki, T. Matsumoto, N. Oka, H. Takamori, H. Kadowaki,
C. Shibata, E. Suzuki, T. Okamura, H. Aso, H. Kitazawa, M. Satoh, H. Uenishi and K. Suzuki. Genome-wide detection of changes in allelic frequency in
Landrace pigs selected for resistance to mycoplasma pneumonia of swine.
Anim. Sci. J. 94:e13827, 2023. |
| 2. |
Takenouchi, T.*, K. Masujin*, S. Suzuki, S. Haraguchi, K. Hiramatsu, T.
Kokuho and H. Uenishi. Establishment and characterization of the immortalized porcine lung-derived
mononuclear phagocyte cell line. Front. Vet. Sci. 9:1058124, 2022. |
| 3. |
Suzuki, K., H. Shinkai, G. Yoshioka, T. Matsumoto, T. Takenouchi, J. Tanaka,
M. Shimizu, H. Kitazawa* and H. Uenishi*. Polymorphisms in pattern recognition receptor genes are associated with
respiratory disease severity in pig farms. Animals 12:3163, 2022. |
| 4. |
Takenouchi, T.*, K. Masujin*, A. Miyazaki*, S. Suzuki, M. Takagi, T. Kokuho
and H. Uenishi. Isolation and immortalization of macrophages derived from fetal porcine
small intestine and their susceptibility to porcine viral pathogen infections.
Front. Vet. Sci. 9:919077, 2022. |
| 5. |
Sameshima-Yamashita, Y., T. Yarimizu, H. Uenishi, T. Tanaka., H. Kitamoto*. Uracil-auxotrophic marker recycling system
for multiple gene disruption in Pseudozyma antarctica. Biosci. Biotechnol. Biochem. 86:1031-1040, 2022. |
| 6. |
Suzuki, K., H. Shinkai, G. Yoshioka, T. Matsumoto, J. Tanaka, N. Hayashi,
H. Kitazawa* and H. Uenishi*. NOD2 genotypes affect the symptoms and mortality in the porcine circovirus
2-spreading pig population. Genes 12:1424, 2021. |
| 7. |
Uemoto, Y.*, K. Ichinoseki, T. Matsumoto, N. Oka, H. Takamori, H. Kadowaki, C. Kojima-Shibata, E. Suzuki, T. Okamura, H. Aso, H. Kitazawa, M. Satoh, H. Uenishi and K. Suzuki. Genome-wide association studies for production, respiratory
disease, and immune-related traits in Landrace pigs selected for Mycoplasmal
pneumonia of swine resistance. Sci. Rep. 11:15823, 2021. |
| 8. |
Shinkai, H.*, Y. Takahagi, T. Matsumoto, D. Toki, T. Takenouchi, H. Kitani,
S. Sukegawa, K. Suzuki and H. Uenishi. A specific promoter-type in RNASEL is associated with phagocytic activity
in pigs. J. Vet. Med. Sci. 83:1407-1415, 2021. |
| 9. |
Waki, M.*, C. Ishimoto, R. Suto, T. Nagamine, T. Matsumoto, H. Uenishi, T. Yasuda and Y. Fukumoto. An analysis of operation conditions and microbial
characteristics in swine wastewater treatment plants with spontaneously
enriched anammox bacteria. Processes 9:1010, 2021. |
| 10. |
Indo, Y., S. Kitahara, M. Tomokiyo, S. Araki, M. A. Islam, B. Zhou, L.
Albarracin, A. Miyazaki, W. Ikeda-Ohtsubo, T. Nochi, T. Takenouchi, H. Uenishi, H. Aso, H. Takahashi, S. Kurata, J. Villena* and H. Kitazawa*. Ligilactobacillus salivarius strains isolated from the porcine gut modulate innate immune responses
in epithelial cells and improve protection against intestinal viral-bacterial
superinfection. Front. Immunol. 12:652923, 2021. |
| 11. |
Kunihisa, M., T. Hayashi, Y. Hatsuyama, T. Fukasawa-Akada, H. Uenishi, T. Matsumoto, T. Kon, S. Kasai, T. Kudo, H. Oshino, T. Yamamoto and J.
Tazawa*. Genome-wide association study for apple flesh browning: detection,
validation, and physiological roles of QTLs. Tree Genet. Genomes 17:11, 2021. |
| 12. |
Takenouchi, T.*, T. Morozumi, E. Wada, S. Suzuki, Y. Nishiyama, S. Sukegawa and H. Uenishi. Dexamethasone enhances CD163 expression in porcine IPKM immortalized
macrophages. In Vitro Cell. Dev. Biol. - Animal 57:10-16, 2021. |
| 13. |
Morozumi, T.*, T. Takenouchi, E. Wada, H. Uenishi and Y. Nishiyama. Susceptibility of immortalized porcine kidney macrophages
to porcine reproductive and respiratory syndrome virus-2 infection. J. Virol. Methods 288:114206, 2021. |
| 14. |
Nieto-Pelegrín, E., B. Álvarez, P. Martínez de la Riva, D.Toki, T. Poderoso,
C. Revilla, H. Uenishi, A. Ezquerra* and J. Domínguez*. Porcine CLEC12B is
expressed on alveolar macrophages and blood dendritic cells. Dev. Comp. Immunol. 111:103767, 2020. |
| 15. |
Álvarez, B., E. Nieto-Pelegrín, P. Martínez De La Riva, D. Toki, T. Poderoso,
C. Revilla, H. Uenishi, A. Ezquerra* and J. Dominguez. Characterization of the porcine CLEC12A and analysis of its expression on blood dendritic cell subsets. Front. Immunol. 11:863, 2020. |
| 16. |
Ishimoto, C., T. Sugiyama, T. Matsumoto, H. Uenishi, Y. Fukumoto and M. Waki*. Full-scale simultaneous partial nitrification, anammox, and denitrification process for treating swine wastewater. Water Sci. Technol. 81:456-465, 2020. |
| 17. |
Yasuda, T.*, Y. Fukumoto, M. Waki, T. Matsumoto and H. Uenishi. Effects of thiosulfate addition on ammonia and nitrogen removal in biofilters
packed with Oyaishi (pumice tuff). Anim. Sci. J. 91:e13313, 2020. |
| 18. |
Iida, H., M. Tohno, M. A. Islam, N. Sato, H. Kobayashi, L. Albarracin.,
A. H. Kober, W. Ikeda-Ohtsubo, Y. Suda, H. Aso, T. Nochi, A. Miyazaki,
H. Uenishi, N. Iwabuchi, J.-Z. Xiao, J. Villena* and H. Kitazawa*. Paraimmunobiotic
Bifidobacteria modulate the expression patterns of peptidoglycan recognition
proteins in porcine intestinal epitheliocytes and antigen presenting cells.
Cells 8:891, 2019. |
| 19. |
Poderoso, T., P. Martínez de la Riva, H. Uenishi, B. Alvarez, D. Toki, E. Nieto-Pelegrín, F. Alonso, J. Domínguez, A. Ezquerra*
and C. Revilla*. Analysis of the expression of porcine CD200R1 and
CD200R1L by using newly developed monoclonal antibodies. Dev. Comp. Immunol. 100:103417, 2019. |
| 20. |
Kojima, M., I. Nakajima, A. Arakawa, S. Mikawa, T. Matsumoto, H. Uenishi, Y. Nakamura and M. Taniguchi*. Differences in gene expression profiles
for subcutaneous adipose, liver, and skeletal muscle tissues between Meishan
and Landrace pigs with different backfat thicknesses. PLoS One 13:e0204135, 2018. |
| 21. |
Shinkai, H., K. Terada, D. Toki, M. Tohno and H. Uenishi*. Q969R polymorphism in NLRP3 is associated with immune responses
to vaccination against bacterial infections in pigs. Anim. Sci. J. 89:1043-1050, 2018. |
| 22. |
Muneta, Y.*, N. Arai, Y. Yakabe, M. Eguchi, T. Shibahara, A. Sakuma, H.
Shinkai, H. Uenishi, K. Hirose and M. Akiba. In vivo effect of a TLR5 SNP (C1205T) on Salmonella enterica serovar Typhimurium infection in weaned, specific pathogen-free Landrace
piglets. Microbiol. Immunol. 62:380-387, 2018. |
| 23. |
Eguchi-Ogawa, T., T. Matsubara, D. Toki, N. Okumura, A. Ando, H. Kitagawa and H. Uenishi*. Distribution of the CD4 alleles in Sus scrofa demonstrates the genetic profiles of Western breeds and miniature pigs.
Anim. Biotechnol. 29:227-233, 2018. |
| 24. |
Yasuda, T.*, M. Waki, Y. Fukumoto, D. Hanajima, K. Kuroda, K. Suzuki, T. Matsumoto and H. Uenishi. Community structure of denitrifying and total bacteria during nitrogen accumulation in an ammonia-loaded biofilter. J. Appl. Microbiol. 123:1498-1511, 2017. |
| 25. |
Takenouchi, T.*, H. Kitani, S. Suzuki, M. Nakai, D. Fuchimoto, M. Tsukimoto, H. Shinkai, M. Sato and H. Uenishi. Immortalization and characterization of porcine macrophages that had
been transduced with lentiviral vectors encoding the SV40 large T antigen
and porcine telomerase reverse transcriptase. Front. Vet. Sci. 4:132, 2017. |
| 26. |
Fukuda, T.*, T. Tani, S. Haraguchi, K. Donai, N. Nakajima, H. Uenishi, T. Eitsuka, M. Miyagawa, S. Song, M. Onuma, Y. Hoshino, E. Sato and A.
Honda. Expression of six proteins causes reprogramming of porcine fibroblasts
into induced pluripotent stem cells with both active X chromosomes. J. Cell. Biochem. 118:537-553, 2017. |
| 27. |
Sakuma, C., D. Toki, H. Shinkai, T. Takenouchi, M. Sato, H. Kitani and
H. Uenishi*. Pig lacks functional NLRC4 and NAIP genes. Immunogenetics 69:125-130, 2017. |
| 28. |
Suto, R., C. Ishimoto, M. Chikyu, Y. Aihara, T. Matsumoto, H. Uenishi, T. Yasuda, Y. Fukumoto and M. Waki*. Anammox biofilm in activated sludge
swine wastewater treatment plants. Chemosphere 167:300-307, 2017. |
| 29. |
Iseki, H., T. Morozumi, M. Takagi, K. Kawashima*, T. Shibahara, H. Uenishi,
H. Tsunemitsu. Genomic sequence and virulence evaluation of MN184A-like
porcine reproductive and respiratory syndrome virus in Japan. Microbiol. Immunol. 60:824-834, 2016. |
| 30. |
Enya, S.*, T. Kawarasaki, M. Otake, A. Kanagawa, H. Uenishi, S. Mikawa, T. Nishimura, Y. Kuwahawa and M. Shibata. Preservation and
reproduction of Microminipigs by cloning technology. In Vivo 30:617-622, 2016. |
| 31. |
Ando, A., A. Shigenari, C. Kojima-Shibata, M. Nakajoh, K. Suzuki, H. Kitagawa, T. Shiina, H. Inoko and H. Uenishi*. Association of swine leukocyte antigen class II haplotypes and immune-related
traits in a swine line selected for resistance to mycoplasmal pneumonia.
Comp. Immunol. Microbiol. Infect. Dis. 48:33-40, 2016. |
| 32. |
Tohno, M.*, H. Shinkai, D. Toki, N. Okumura, K. Tajima and H. Uenishi. Porcine NLRP3 polymorphism Q969R with gain-of-function and its distribution
in pig populations. Immunogenetics 68:693-701, 2016. |
| 33. |
Okamura, T., K. Maeda, W. Onodera, H. Kadowaki, C. Kojima-Shibata, E. Suzuki,
H. Uenishi, M. Satoh and K. Suzuki*. Correlated responses of respiratory disease
and immune capacity traits of Landrace pigs selected for Mycoplasmal pneumonia
of swine (MPS) lesion. Anim. Sci. J. 87:1099-1105, 2016. |
| 34. |
Suzuki, S.*, M. Iwamoto, M. Hashimoto, M. Suzuki, M. Nakai, D. Fuchimoto,
S. Sembon, T. Eguchi-Ogawa, H. Uenishi and A. Onishi. Generation and characterization of RAG2 knockout pigs as
animal model for severe combined immunodeficiency. Vet. Immunol. Immunopathol. 178:37-49, 2016. |
| 35. |
Shinkai, H., D. Toki, N. Okumura, T. Takenouchi, H. Kitani and H. Uenishi*. Polymorphisms of the immune-modulating receptor dectin-1 in pigs: their
functional influence and distribution in pig populations. Immunogenetics 68:275-284, 2016. |
| 36. |
Sato, T., T. Okamura, C. Kojima-Shibata, H. Kadowaki, E. Suzuki, H. Uenishi and K. Suzuki*. Correlated response of peripheral blood cytokines with selection for reduced mycoplasma pneumonia of swine lesions in Landrace pigs. Anim. Sci. J. 87:477-483, 2015. |
| 37. |
Arakawa, A., N. Okumura, M. Taniguchi, T. Hayashi, K. Hirose, K. Fukawa,
T. Ito, T. Matsumoto, H. Uenishi and S. Mikawa*. Genome-wide association QTL mapping for teat number in
a purebred population of Duroc pigs. Anim Genet. 46:571-575, 2015. |
| 38. |
Álvarez, B., Z. Escalona, H. Uenishi, D. Toki, C. Revilla, M. Yuste, M. Gómez del Moral, F. Alonso, A. Ezquerra
and J. Domínguez*. Molecular and functional characterization of porcine
Siglec-3/CD33 and analysis of its expression in blood and tissues. Dev. Comp. Immunol. 51:238-250, 2015. |
| 39. |
Bergman, I. M., N. Okumura, H. Uenishi, S. E. Hammer, A. Knoll, I. Edfors and H. R. Juul-Madsen*. Wild boars
from Sweden, Austria, the Czech Republic, and Japan possess intact mannose-binding
lectin 2 (MBL2) genes. Int J. Immunogenet. 42:204-207, 2015. |
| 40. |
Shinkai, H., T. Matsumoto, D. Toki, N. Okumura, K. Terada and H. Uenishi*. Porcine NOD1 polymorphisms with impaired ligand recognition and their
distribution in pig populations. Mol. Immunol. 63:305-311, 2015. |
| 41. |
Escalona, Z., B. Álvarez, H. Uenishi, D. Toki, M. Yuste, C. Revilla, M. Gómez del Moral, F. Alonso, A. Ezquerra
and J. Domínguez*. Molecular characterization of porcine Siglec-10 and
analysis of its expression in blood and tissues. Dev. Comp. Immunol. 48:116-123, 2015. |
| 42. |
Morozumi, T., H. Iseki, D. Toki, M. Takagi, H. Tsunemitsu and H. Uenishi*. Concise and broadly applicable method for determining the genomic sequences
of North-American–type porcine reproductive and respiratory syndrome viruses
in various clusters. J. Vet. Med. Sci. 76:1249-1255, 2014. |
| 43. |
Takenouchi, T.*, S. Suzuki, H. Shinkai, M. Tsukimoto, M. Sato, H. Uenishi and H. Kitani*. Extracellular ATP does not induce P2X7 receptor-dependent responses in cultured renal- and liver-derived swine macrophages. Results Immunol. 4:62-67, 2014. |
| 44. |
Mizorogi, S., Y. Yakabe, T. Shibahara, M. Akiba, M. Kusumoto, A. Sakuma,
M. Nakajo, H. Shinkai, H. Uenishi and Y. Muneta*. Experimental infection of Salmonella enterica serovar Choleraesuis to HPCD piglets and trial to validate the effect
of a TLR5 SNP (C1205T). Proc. Jpn. Pig Vet. Soc. (63):6-11, 2014 (in Japanese). |
| 45. |
Escalona, Z., B. Álvarez, H. Uenishi, D. Toki, M. Yuste, C. Revilla, M. Gómez del Moral, F. Alonso, A. Ezquerra
and J. Domínguez*. Molecular characterization and expression of porcine
Siglec-5. Dev. Comp. Immunol. 44:206-216, 2014. |
| 46. |
Sasaki, K., P. Tungtrakoolsub, T. Morozumi, H. Uenishi, M. Kawahara* and T. Watanabe. A single nucleotide polymorphism of porcine MX2 gene provides antiviral activity against vesicular stomatitis virus. Immunogenetics 66:25-32, 2014. |
| 47. |
Dawson, H. D., J. E. Loveland, G. Pascal, J. G. R. Gilbert, H. Uenishi, K. M. Mann, Y. Sang, J. Zhang, D. Carvalho-Silva, T. Hunt, M. Hardy,
Z. Hu, S.-H. Zhao, A. Anselmo, H. Shinkai, C. Chen, B. Badaoui, D. Berman,
C. Amid, M. Kay, D. Lloyd, C. Snow, T. Morozumi, R. P.-Y. Cheng, M. Bystrom,
R. Kapetanovic, J. C. Schwartz, R. Kataria, M. Astley, E. Fritz, C. Steward,
M. Thomas, L. Wilming, D. Toki, A. L. Archibald, B. Bed'Hom, D. Beraldi,
T.-H. Huang, T. Ait-Ali, F. Blecha, S. Botti, T. C. Freeman, E. Giuffra,
D. A. Hume, J. K. Lunney, M. P. Murtaugh, J. M. Reecy, J. L. Harrow, C.
Rogel-Gaillard* and C. K. Tuggle*. Structural and functional annotation
of the porcine immunome. BMC Genomics 14:332, 2013. |
| 48. |
Okumura, N.*, T. Matsumoto, T. Hayashi, K. Hirose, K. Fukawa, T. Itou, H. Uenishi, S. Mikawa and T. Awata. Genomic regions affecting backfat thickness and cannon bone circumference identified by genome-wide association study in a Duroc pig population. Anim. Genet. 44:454-457, 2013. |
| 49. |
Bergman, I.-M.*, K. Sandholm, K. N. Ekdahl, N. Okumura, H. Uenishi, B. Guldbrandtsen, S. E. Essler, A. Knoll, P. M. H. Heegaard, I. Edfors
and H. R. Juul-Madsen. MBL1 genotypes in wild boar populations from Sweden,
Austria, the Czech Republic, and Japan. Int. J. Immunogenet. 40:131-139, 2013. |
| 50. |
Moreno, S., B. Álvarez, P. Martínez, H. Uenishi, C. Revilla, A. Ezquerra, F. Alonso and J. Domínguez*. Analysis of chemokine
receptor CCR7 expression on porcine blood T lymphocytes using a CCL19-Fc
fusion protein. Dev. Comp. Immunol. 39:207-213, 2013. |
| 51. |
Suzuki, A., N. Okumura*, Y. Uehara, H. Uenishi and T. Awata. An identification for the Tokyo X strain; the pig brand
of the Tokyo Metropolitan Agriculture and Forestry Research Center. J. Anim. Vet. Adv. 11:4236-4245, 2012. |
| 52. |
Uenishi, H.*, T. Morozumi, D. Toki, T. Eguchi-Ogawa, L. A. Rund and L. B. Schook. Large-scale
sequencing based on full-length-enriched cDNA libraries in pigs: contribution
to annotation of the pig genome draft sequence. BMC Genomics 13:581, 2012. |
| 53. |
Groenen, M. A. M.*, A. L. Archibald*, H. Uenishi, C. K. Tuggle, Y. Takeuchi, M. F. Rothschild, C. Rogel-Gaillard, C. Park , D. Milan, H.-J. Megens, S. Li, D. M. Larkin, H. Kim, L. A. F. Frantz, M. Caccamo, H. Ahn, B. L. Aken, A. Anselmo, C. Anthon, L. Auvil, B. Badaoui, C. W. Beattie, C. Bendixen, D. Berman, F. Blecha, J. Blomberg, L. Bolund, M. Bosse, S. Botti, Z. Bujie, M. Bystrom, B. Capitanu, D. Carvalho-Silva, P. Chardon, C. Chen, R. Cheng, S.-H. Choi, W. Chow, R. C. Clark, C. Clee, R. P. M. A. Crooijmans, H. D. Dawson, P. Dehais, F. De Sapio, B. Dibbits, N. Drou, Z.-Q. Du, K. Eversole, J. Fadista, S. Fairley, T. Faraut, G. J. Faulkner, K. E. Fowler, M. Fredholm, E. Fritz, J. G. R. Gilbert, E. Giuffra, J. Gorodkin, D. K. Griffin, J. L. Harrow, A. Hayward, K. Howe, Z.-L. Hu, S. J. Humphray, T. Hunt, H. H. Jensen, J.-T. Jeon, P. Jern, M. Jones, J. Jurka, H. Kanamori, R. Kapetanovic, J. Kim, J.-H. Kim, K.-W. Kim, T.-H. Kim, G. Larson, K. Lee, K.-T. Lee, R. Leggett, H. A. Lewin, Y. Li, W. Liu, J. E. Loveland, Y. Lu, J. K. Lunney, J. Ma, O. Madsen, K. Mann, L. Matthews, S. McLaren, T. Morozumi, M. Murtaugh, J. Narayan, D. T. Nguyen, P. Ni, S.-J. Oh, S. Onteru, F. Panitz, E.-W. Park, H.-S. Park, G. Pascal, Y. Paudel, M. Perez-Enciso, R. Ramirez-Gonzalez, J. M. Reecy, S. Rodriguez-Zas, G. A. Rohrer, L. Rund, Y. Sang, K. Schachtschneider, J. G. Schraiber, J. Schwartz, L. Scobie, C. Scott, S. Searle, B. Servin, B. R. Southey, G. Sperber, P. Stadler, J. Sweedler, H. Tafer, B. Thomsen, R. Wali, J. Wang, J. Wang, S. White, X. Xu, M. Yerle, G. Zhang, J. Zhang, J. Zhang, S. Zhao, J. Rogers, C. Churcher and L. B. Schook. Analyses of pig genomes provide insight into porcine demography and evolution. Nature 491:393-398, 2012. |
| 54. |
Shinkai, H., A. Arakawa, M. Tanaka-Matsuda, H. Ide-Okumura, K. Terada,
M. Chikyu, T. Kawarasaki, A. Ando and H. Uenishi*. Genetic variability in swine leukocyte antigen class II and Toll-like
receptors affects immune responses to vaccination for bacterial infections
in pigs. Comp. Immunol. Microbiol. Infect. Dis. 35:523-532, 2012. |
| 55. |
Okamura, T., W. Onodera, T. Tayama, H. Kadowaki, C. Kojima-Shibata, E.
Suzuki, Y. Uemoto, S. Mikawa, T. Hayashi, T. Awata, N. Fujishima-Kanaya,
A. Mikawa , H. Uenishi and K. Suzuki*. A genome-wide scan for quantitative trait loci affecting
respiratory disease and immune capacity in Landrace pigs. Anim. Genet. 43:721-729, 2012. |
| 56. |
Matsumoto, T., I. Nakajima, T. Eguchi-Ogawa, Y. Nagamura, N. Hamasima* and H. Uenishi*. Changes in gene expression in a porcine preadipocyte cell line during
differentiation. Anim. Genet. 43:535-544, 2012. |
| 57. |
Muneta, Y.*, Y. Minagawa, M. Kusumoto, H. Shinkai, H. Uenishi and I. Splichal. Allele-specific primer polymerase chain reaction for
a single nucleotide polymorphism (C1205T) of swine Toll-like receptor 5
and comparison of the allelic frequency among several pig breeds in Japan
and the Czech Republic. Microbiol. Immunol. 56:385-391, 2012. |
| 58. |
Eguchi-Ogawa, T., D. Toki, N. Wertz, J. E. Butler and H. Uenishi*. Structure of the genomic sequence comprising the immunoglobulin heavy constant (IGHC) genes from Sus scrofa. Mol. Immunol. 52:97-107, 2012. |
| 59. |
Muneta, Y.*, Y. Minagawa, M. Kusumoto, H. Shinkai, H. Uenishi and I. Splichal. Development of allele-specific primer PCR for a swine
TLR2 SNP and comparison of the frequency among several pig breeds of Japan
and the Czech Republic. J. Vet. Med. Sci. 74:553-559, 2012. |
| 60. |
Matsumoto, T., N. Okumura*, H. Uenishi, T. Hayashi, N. Hamasima and T. Awata. Porcine single nucleotide polymorphism (SNP) development and population structure of pigs accessed by validated SNPs. Biochem. Genet. 50:428-439, 2012. |
| 61. |
Shinkai, H., N. Okumura, R. Suzuki, Y. Muneta and H. Uenishi*. Toll-like receptor 4 polymorphism impairing lipopolysaccharide signaling
in Sus scrofa, and its restricted distribution among Japanese wild boar populations. DNA Cell Biol. 31:575-581, 2012. |
| 62. |
Suzuki, K., E. Kobayashi, H. Yamashita, H. Uenishi, I. Churkina, G. Plastow, N. Hamasima* and T. Mitsuhashi*. Structural analysis of MHC alleles in an RSV-tumor regression chicken using a BAC library. Anim. Genet. 43:348-351, 2012. |
| 63. |
Kita, Y. F., A. Ando, K. Tanaka, S. Suzuki, Y. Ozaki, H. Uenishi, H. Inoko, J. K. Kulski and T. Shiina*. Application of high-resolution,
massively parallel pyrosequencing for estimation of haplotypes and gene
expression levels of swine leukocyte antigen (SLA) class I genes. Immunogenetics 64:187-199, 2012. |
| 64. |
Matsumoto, T., N. Okumura*, H. Uenishi, T. Hayashi, N. Hamasima and T. Awata. Population structure of pigs determined by single nucleotide polymorphisms observed in assembled expressed sequence tags. Anim. Sci. J. 83:14-22, 2012. |
| 65. |
Morozumi, T., D. Toki, T. Eguchi-Ogawa and H. Uenishi*. A rapid and cost-effective method for sequencing pooled cDNA clones by using a combination of transposon insertion and Gateway technology. BioTechniques 51:195-197, 2011. |
| 66. |
Katayama, M., T. Fukuda, T. Okamuara, Y. Suda, E. Suzuki, H. Uenishi and K. Suzuki*. Immunophenotype characterization for swine selected line
which is resistant for the Mycoplasma pneumonia. Asian-Aust. J. Anim Sci. 24:889-897, 2011. |
| 67. |
Ando, A., A. Shigenari, M. Ota, M. Sada, H. Kawata, F. Azuma, C. Kojima-Shibata, M. Nakajoh, K. Suzuki, H. Uenishi, J. K. Kulski and H. Inoko*. SLA-DRB1 and -DQB1 genotyping by the PCR-SSOP-Luminex
method. Tissue Antigens 78:49-55, 2011. |
| 68. |
Uenishi, H.*, H. Shinkai, T. Morozumi, Y. Muneta, K. Jozaki, C. Kojima-Shibata and
E. Suzuki. Polymorphisms in pattern recognition receptors and their relationship
to infectious disease susceptibility in pigs. BMC Proc. 5(Suppl 4):S27, 2011. |
| 69. |
Kita, Y. F., A. Ando, K. Tanaka, K. Hosomichi, H. Uenishi, H. Inoko and T. Shiina*. Development of MHC typing method using by next
generation sequencer Roche 454FLX. DNA polymorphism 19:223-229, 2011 (in Japanese). |
| 70. |
Shinkai, H., R. Suzuki, M. Akiba, N. Okumura and H. Uenishi*. Porcine Toll-like receptors: Recognition of Salmonella enterica serovar Choleraesuis and influence of polymorphisms. Mol. Immunol. 48:1114-1120, 2011. |
| 71. |
Jozaki, K., H. Shinkai, T. Morozumi, M. Tanaka-Matsuda, T. Eguchi-Ogawa,
Y. Wada and H. Uenishi*. Cloning, expression, and polymorphisms of natural killer cell receptor
NCR1 in pigs. Anim. Biotechnol. 21:156-163, 2010. |
| 72. |
Archibald, A. L.*, L. Bolund, C. Churcher, M. Fredholm, M. A. M. Groenen, B. Harlizius, K.-T. Lee, D. Milan, J. Rogers, M. F. Rothschild, H. Uenishi, J. Wang, L. B. Schook* and the Swine Genome Sequencing Consortium. Pig
genome sequence – analysis and publication strategy. BMC Genomics 11:438, 2010. |
| 73. |
Eguchi-Ogawa, T., N. Wertz, X.-Z. Sun, F. Puimi, H. Uenishi, K. Wells, P. Chardon, G. J. Tobin and J. E. Butler*. Antibody repertoire
development in fetal and neonatal piglets. XI. The relationship of variable
heavy chain gene usage and the genomic organization of the variable heavy
chain locus. J. Immunol. 184:3734-3742, 2010. |
| 74. |
Suzuki, K., T. Matsumoto, E. Kobayashi, H. Uenishi, I. Churkina, G. Plastow, H. Yamashita, N. Hamasima* and T. Mitsuhashi*. Genotypes of chicken major histocompatibility complex B locus associated with regression of Rous sarcoma virus J-strain tumors. Poult. Sci. 89:651-657, 2010. |
| 75. |
Okumura, N.*, T. Hayashi, H. Uenishi, N. Fukudome, A. Komatsuda, A. Suzuki, M. Shibata, M. Nii, T. Yamaguchi, C. Kojima-Shibata, N. Hamasima and T. Awata. Sequence polymorphisms in porcine homologs of murine coat colour-related genes. Anim. Genet. 41:113-121, 2010.
|
| 76. |
Jozaki, K., H. Shinkai, M. Tanaka-Matsuda, T. Morozumi, T. Matsumoto, D.
Toki, N. Okumura, T. Eguchi-Ogawa, C. Kojima-Shibata, H. Kadowaki, E. Suzuki,
Y. Wada and H. Uenishi*. Influence of polymorphisms in porcine NOD2 on ligand recognition. Mol. Immunol. 47:247-252, 2009. |
| 77. |
Eguchi-Ogawa, T., D. Toki and H. Uenishi*. Genomic structure of the whole D-J-C clusters and the upstream region coding V segments of the TRB locus in pig. Dev. Comp. Immunol. 33:1111-1119, 2009. |
| 78. |
Morozumi, T. and H. Uenishi*. Polymorphism distribution and structural conservation in RNA-sensing
Toll-like receptors 3, 7, and 8 in pigs. Biochim. Biophys. Acta 1790:267-274, 2009. |
| 79. |
Uenishi, H.*, T. Eguchi-Ogawa, D. Toki, T. Morozumi, M. Tanaka-Matsuda, H. Shinkai,
R. Yamamoto and Y. Takagaki. Genomic sequence encoding diversity segments
of the pig TCR delta chain gene demonstrates productivity of highly diversified
repertoire. Mol. Immunol. 46:1212-1221, 2009. |
| 80. |
Kojima-Shibata, C., H. Shinkai, T. Morozumi, K. Jozaki, D. Toki, T. Matsumoto,
H. Kadowaki, E. Suzuki and H. Uenishi*. Differences in distribution of single nucleotide polymorphisms among
intracellular pattern recognition receptors in pigs. Immunogenetics 61:153-160, 2009. |
| 81. |
Tanaka-Matsuda, M., A. Ando, C. Rogel-Gaillard, P. Chardon and H. Uenishi*. Difference in number of loci of swine leukocyte antigen classical class
I genes among haplotypes. Genomics 93:261-273, 2009. |
| 82. |
Morozumi, T., T. Naito, P. D. Lan, E. Nakajima, T. Mitsuhashi, S. Mikawa, T. Hayashi, T. Awata, H. Uenishi, K. Nagata, T. Watanabe and N. Hamasima*. Molecular cloning and characterization
of porcine Mx2 gene. Mol. Immunol. 46:858-865, 2009. |
| 83. |
Soe, O. K., Y. Ohba, N. Imaeda, N. Nishii, M. Takasu, G. Yoshioka, H. Kawata,
A. Shigenari, H. Uenishi, H. Inoko, A. Ando* and H. Kitagawa. Assignment of the SLA alleles and
reproductive potential of selective breeding Duroc pig lines. Xenotransplantation 15:390-397, 2008. |
| 84. |
Ando, A., H. Uenishi, H. Kawata, M. Tanaka-Matsuda, A. Shigenari, L. Flori, P. Chardon, J.
K. Lunney, J. K. Kulski and H. Inoko*. Microsatellite diversity and crossover
regions within homozygous and heterozygous SLA haplotypes of different
pig breeds. Immunogenetics 60:399-407, 2008. |
| 85. |
Hamasima, N.*, A. Mikawa, H. Suzuki, K. Suzuki, H. Uenishi and T. Awata. A new 4016-marker radiation hybrid map for porcine-human
genome analysis. Mamm. Genome 19:51-60, 2008. |
| 86. |
Mikawa, S.*, T. Morozumi, S.-I. Shimanuki, T. Hayashi, H. Uenishi, M. Domukai, N. Okumura and T. Awata. Fine mapping of a swine quantitative
trait locus for number of vertebrae and analysis of an orphan nuclear receptor,
germ cell nuclear factor (NR6A1). Genome Res. 17:586-593, 2007. |
| 87. |
Eguchi-Ogawa, T., T. Morozumi, M. Tanaka, H. Shinkai, N. Okumura, K. Suzuki, T. Awata and H. Uenishi*. Analysis of genomic structure of porcine CD1 gene cluster. Genomics 89:248-261, 2007. |
| 88. |
Yamamoto, R., H. Uenishi, H. Yasue, Y. Takagaki and E. Sato*. The genomic structure and a novel
alternatively spliced form of porcine pTalpha chain. Mol. Immunol. 44:591-597, 2007. |
| 89. |
Uenishi, H.*, T. Eguchi-Ogawa, H. Shinkai, N. Okumura, K. Suzuki, D. Toki, N. Hamasima
and T. Awata. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Nucleic Acids Res. 35:D650-D653, 2007. |
| 90. |
Tayama, T., K. Suzuki*, S. Mikawa, T. Awata, H. Uenishi, T. Hayashi, K. Maeda, T. Kachi, Y. Uemoto, H. Kano, T. Shibata, C. Kojima
and A. Nishida. Identification of quantitative trait loci for immune traits
in Landrace purebred swine. Jpn. J. Swine Science 43:187-194, 2006 (in Japanese). |
| 91. |
Thadtha, P., H. Uenishi, H. Urata, M. Ishikawa and Y. Wada*. Transcript variant of the porcine
liver X receptor alpha (LXRalpha) expressed in the thymus and spleen. J. Anim. Genet. 34:3-9, 2006. |
| 92. |
Shinkai, H., M. Tanaka, T. Morozumi, T. Eguchi-Ogawa, N. Okumura, Y. Muneta, T. Awata and H. Uenishi*. Biased distribution of single nucleotide polymorphisms (SNPs) in porcine
Toll-like receptor 1 (TLR1), TLR2, TLR4, TLR5, and TLR6 genes. Immunogenetics 58:324-330, 2006. |
| 93. |
Shinkai, H., Y. Muneta, K. Suzuki, T. Eguchi-Ogawa, T. Awata and H. Uenishi*. Porcine Toll-like receptor 1, 6, and 10 genes: Complete sequencing of
genomic region and expression analysis. Mol. Immunol. 43:1474-1480, 2006. |
| 94. |
Tanaka, M., K. Suzuki, T. Morozumi, E. Kobayashi, T. Matsumoto, M. Domukai, T. Eguchi-Ogawa, H. Shinkai, T. Awata and H. Uenishi*. Genomic structure and gene order of the region on swine chromosome 7q1.1->q1.2.
Anim. Genet. 37:10-16, 2006. |
| 95. |
Kawabata, H., A. Niwa, S. Tsuji-Kawahara, H. Uenishi, N. Iwanami, H. Matsukuma, H. Abe, N. Tabata, H. Matsumura and M. Miyazawa*.
Peptide-induced immune protection of CD8+ T cell-deficient mice against Friend retrovirus-induced disease.
Int. Immunol. 18:183-198, 2006. |
| 96. |
Thadtha, P., Y. Yamada, H. Uenishi and Y. Wada*. Molecular cloning of the gene encoding pregnane X receptor
(PXR; NR1I2) and the constitutive androstane receptor (CAR; NR1I3) in pigs.
J. Anim. Genet. 33:3-10, 2005. |
| 97. |
Tanaka, M., A. Ando, C. Renard, P. Chardon, M. Domukai, N. Okumura, T.
Awata and H. Uenishi*. Development of dense microsatellite markers in the entire SLA region
and evaluation of their polymorphisms in porcine breeds. Immunogenetics 57:690-696, 2005. |
| 98. |
Mikawa, S., H. Kishi, H. Ogawa, K. Iga, H. Uenishi and H. Yasue*. Analysis of recessive lethality on swine chromosome 6 in
a Goettingen miniature resource family. Anim. Genet. 36:376-380, 2005. |
| 99. |
Yamamoto, R., H. Uenishi, H. Hatsuse, E. Sato, T. Awata, H. Yasue and Y. Takagaki*. Jalpha-gene
segment usage and the CDR3 diversity of porcine TCRalpha-chain cDNA clones
from the PBL of a five-month-old pig and the thymus of a one-month-old
pig. Mol. Immunol. 42:1375-1383, 2005. |
| 100. |
Yamamoto, R., H. Uenishi, H. Hatsuse, E. Sato, T. Awata, H. Yasue and Y. Takagaki*. TRAV gene usage in pig T-cell receptor alpha cDNA. Immunogenetics 57:219-225, 2005. |
| 101. |
Shinkai, H., T. Morozumi, D. Toki, T. Eguchi-Ogawa, Y. Muneta, T. Awata
and H. Uenishi*. Genomic structure of eight porcine chemokine receptors reveals intergene
sharing of an exon between CCR1 and XCR1. Gene 349:55-66, 2005. |
| 102. |
Inage-Miyake, Y., S. Shimanuki, T. Itoh, Y. Murakami, M. Kimura, H. Suzuki,
M. Miyake, D. Toki, H. Uenishi, T. Awata and N. Hamasima*. Assignment of the gene for porcine insulin-like
growth factor binding protein 1 to chromosome 18 and detection of polymorphisms
in intron 2 by PCR-RFLP. Biochem. Genet. 43:79-85, 2005. |
| 103. |
Fujishima-Kanaya, N., Y. Ito, K. Suzuki, T. Sawazaki, H. Hiraiwa, H. Uenishi* and T. Awata. The porcine homologues of six genes located on human chromosome
8 (RAB2, CA3, PTDSS1, MATN2, FZD6, and SQLE) assigned to porcine chromosome 4 by fluorescence in situ hybridization.
Anim. Genet. 35:501-502, 2004. |
| 104. |
Mikawa, S.*, S. Shimanuki, T. Morozumi, M. Domukai, H. Shinkai, Y. Uchida,
A. Mikawa, M. Miyake, Y. Miyake, N. Hayashi, H. Kusumoto, H. Uenishi, T. Hayashi and T. Awata. Comparative analysis and development of microsatellite
markers on swine (Sus scrofa) chromosome 1qter. Anim. Genet. 35:445-450, 2004. |
| 105. |
Muneta, Y.*, R. Kikuma, H. Uenishi, T. Hoshino, K. Yoshihara, M. Tanaka, N. Hamashima and Y. Mori. Molecular
cloning, chromosomal location, and biological activity of porcine interleukin-21.
J. Vet. Med. Sci. 66:269-275, 2004. |
| 106. |
Mikawa, A., H. Suzuki, K. Suzuki, D. Toki, H. Uenishi, T. Awata and N. Hamasima*. Characterization of 298 ESTs from porcine
back fat tissue and their assignment to the radiation hybrid map. Mamm. Genome 15:315-322, 2004. |
| 107. |
Oishi, M., H. Gohma, H. Y. Lejukole, Y. Taniguchi, T. Yamada, K. Suzuki,
H. Shinkai, H. Uenishi, H. Yasue and Y. Sasaki*. Generation of a total of 6,483 expressed sequence
tags from 60 day-old bovine whole fetus and fetal placenta. Anim. Biotechnol. 15:1-8, 2004. |
| 108. |
Uenishi, H.*, T. Eguchi, K. Suzuki, T. Sawazaki, D. Toki, H. Shinkai, N. Okumura, N.
Hamasima and T. Awata. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Nucleic Acids Res. 32:D484-D488, 2004. |
| 109. |
Bosak, N., T. Faraut, S. Mikawa, H. Uenishi, S. Kiuchi, H. Hiraiwa, T. Hayashi and H. Yasue*. Construction of a high-resolution
comparative gene map between swine chromosome region 6q11->q21 and human
chromosome 19 q-arm by RH mapping of 51 genes. Cytogenet. Genome Res. 102:109-115, 2003. |
| 110. |
Shinkai, H., Y. Muneta, T. Eguchi, K. Suzuki, T. Awata and H. Uenishi*. Molecular cloning and chromosomal assignment to SSC12p13->p11 of swine
chemokine receptor CCR7. Cytogenet. Genome Res. 101:155-160, 2003. |
| 111. |
Muneta, Y.*, H. Uenishi, R. Kikuma, K. Yoshihara, Y. Shimoji, R. Yamamoto, N. Hamashima, Y. Yokomizo
and Y. Mori. Porcine TLR2 and TLR6: identification and their involvement
in Mycoplasma hyopneumoniae infection. J. Interferon Cytokine Res. 23:583-590, 2003. |
| 112. |
Hiraiwa, H., T. Sawazaki, K. Suzuki, N. Fujishima-Kanaya, D. Toki, Y. Ito, H. Uenishi, T. Hayashi, T. Awata and H. Yasue*. Elucidation of correspondence between
swine chromosome 4 and human chromosome 1 by assigning 27 genes to the
ImpRH map, and development of microsatellites in the proximity of 14 genes.
Cytogenet. Genome Res. 101:84-89, 2003. |
| 113. |
Tanaka, M., T. Matsumoto, S. Yanai, M. Domukai, D. Toki, T. Hayashi, S.
Kiuchi, H. Yasue, H. Uenishi*, E. Kobayashi and T. Awata. Conservation of the syntenies between porcine
chromosome 7 and human chromosomes 6, 14 and 15 demonstrated by radiation
hybrid mapping and linkage analysis. Anim. Genet. 34:255-263, 2003. |
| 114. |
Uenishi, H.*, H. Hiraiwa, R. Yamamoto, H. Yasue, Y. Takagaki, T. Shiina, E. Kikkawa,
H. Inoko and T. Awata. Genomic structure around joining segments and constant
regions of swine T-cell receptor alpha/delta (TRA/TRD) locus. Immunology 109:515-526, 2003. |
| 115. |
Fujishima-Kanaya, N., D. Toki, K. Suzuki, T. Sawazaki, H. Hiraiwa, M. Iida, T. Hayashi, H. Uenishi*, Y. Wada, Y. Ito and T. Awata. Development of 50 gene-associated microsatellite
markers using BAC clones and the construction of a linkage map of swine
chromosome 4. Anim. Genet. 34:135-141, 2003. |
| 116. |
Honma, D., H. Uenishi, H. Hiraiwa, S. Watanabe, W. Tang, N. Kiyokawa, J. Fujimoto, H. Yasue*
and K. Sakimura. Cloning and characterization of porcine common gamma chain
gene. J. Interferon Cytokine Res. 23:101-111, 2003. |
| 117. |
Kiuchi, S., Y. Z. Chen, H. Uenishi, T. Hayashi, E. Soeda and H. Yasue*. Construction of a dense comparative
map between human chromosome 1p36->p35 and swine chromosome 6 by using
human sequence-tagged sites. Cytogenet. Genome Res. 98:67-70, 2002. |
| 118. |
Yamamoto, R., Y. Muneta, H. Hiraiwa, S. Kiuchi, H. Yasue, Y. Takagaki, T. Awata and H. Uenishi*. Assignment of swine TNFRSF6 (Fas) to chromosome 14q25->q27 and TNFSF6
(FasL) to chromosome 9q14->q22 by FISH and radiation hybrid mapping.
Cytogenet. Genome Res. 97:276D, 2002. |
| 119. |
Muneta, Y.*, H. Uenishi, R. Yamamoto, K. Yoshihara, H. Yasue, T. Awata and Y. Mori. Cloning, expression
analyses, and chromosomal location of porcine interleukin-18 receptor alpha
chain (IL-18Ra). J. Interferon Cytokine Res. 22:995-1002, 2002. |
| 120. |
Kiuchi, S., Y. Inage, H. Hiraiwa, H. Uenishi and H. Yasue*. Assignment of 280 swine genomic inserts including 31 microsatellites
from BAC clones to the swine RH map (IMpRH map). Mamm. Genome 13:80-88, 2002. |
| 121. |
Hiraiwa, H., H. Uenishi and H. Yasue*. Alignment of VIM, MRC1, GAD2, and IL2RA genes on swine
chromosome 10q by in situ hybridization and RH mapping. Cytogenet. Cell Genet. 94:229-232, 2001. |
| 122. |
Hiraiwa, H., H. Uenishi, S. Kiuchi, M. Watanabe, Y. Takagaki and H. Yasue*. Assignment of T cell
receptor (TCR) alpha-chain gene (A), beta-chain gene (B), gamma-chain gene
(G), and delta-chain gene (D) loci on swine chromosomes by in situ hybridization
and radiation hybrid mapping. Cytogenet. Cell Genet. 93:94-99, 2001. |
| 123. |
Uenishi, H.*, H. Hiraiwa, T. Sawazaki, S. Kiuchi and H. Yasue. Genomic organization
and assignment of the interleukin 7 gene (IL7) to porcine chromosome 4q11->q13
by FISH and by analysis of radiation hybrid panels. Cytogenet. Cell Genet. 93:65-72, 2001. |
| 124. |
Karnuah, A. B., H. Uenishi, S. Kiuchi, M. Kojima, A. Onishi, H. Yasue* and T. Mitsuhashi. Assignment
of 64 genes expressed in 28-day-old pig embryo to radiation hybrid map.
Mamm. Genome 12:518-523, 2001. |
| 125. |
Yasue, H.*, S. Mikawa, H. Uenishi and Y. Wada. Analysis of allele segregation distortion in a swine resource
family. Anim. Biotechnol. 10:147-152, 1999. |
| 126. |
Uenishi, H., N. Iwanami, H. Yamagishi, T. Nakatani, T. Kawasaki, H. Tamamura, N. Fujii
and K. Kuribayashi*. Induction of cross-reactivity in an endogenous viral
peptide non-reactive to FBL-3 tumor-specific helper T-cell clones. Microbiol. Immunol. 42:479-484, 1998. |
| 127. |
Uenishi, H., N. Iwanami, K. Kuribayashi, H. Tamamura, N. Fujii, T. Nakatani, T. Kawasaki
and H. Yamagishi*. Overlapping epitopes of friend murine leukemia virus
gag-encoded leader sequence recognized by single cytotoxic T-lymphocyte clones.
Immunol. Lett. 62:33-38, 1998. |
| 128. |
Kondo, T., H. Uenishi, T. Shimizu, T. Hirama, M. Iwashiro, K. Kuribayashi, H. Tamamura, N. Fujii,
R. Fujisawa, M. Miyazawa and H. Yamagishi*. A single retroviral gag precursor
signal peptide recognized by FBL-3 tumor-specific cytotoxic T lymphocytes.
J. Virol. 69:6735-6741, 1995. |
| 129. |
Miyazawa, M.*, R. Fujisawa, C. Ishihara, Y. A. Takei, T. Shimizu, H. Uenishi, H. Yamagishi and K. Kuribayashi. Immunization with a single T helper
cell epitope abrogates Friend virus-induced early erythroid proliferation
and prevents late leukemia development. J. Immunol. 155:748-758, 1995. |
| 130. |
Shimizu, T., H. Uenishi, Y. Teramura, M. Iwashiro, K. Kuribayashi, H. Tamamura, N. Fujii and H.
Yamagishi*. Fine structure of a virus-encoded helper T-cell epitope expressed
on FBL-3 tumor cells. J. Virol. 68:7704-7708, 1994. |